Schema CVRML_schema.xsd

schema location:	C:\Documents and Settings\ppeer\Desktop\CVRML\WWW_portal\CVRML_schema.xsd
attribute form default:	unqualified
element form default:	qualified
targetNamespace:	cvrml

Elements

Annotation_type

Annotation_types

Circle

CVRML

Ellipse

Gaussian_model

Gel_2D

Gels_2D

Models_2D

Models_3D

Rectangle

Spot

Spots

element Annotation_type

Pairing_gel_id Representative_spot Corresponding_spots Spot_of_interest

Annotation type related to this spot in the gel

source

<xs:element name="Annotation_type">
  <xs:annotation>
    <xs:documentation>Annotation type related to this spot in the gel</xs:documentation>
  </xs:annotation>
  <xs:complexType>
    <xs:sequence>
      <xs:element name="Pairing_gel_id" type="xs:long">
        <xs:annotation>
          <xs:documentation>Related gel identification number</xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:choice>
        <xs:annotation>
          <xs:documentation>Two options</xs:documentation>
        </xs:annotation>
        <xs:sequence>
          <xs:element name="Representative_spot" type="xs:boolean" fixed="true">
            <xs:annotation>
              <xs:documentation>Spot that is in both gels well and equally expressed (set to value true)</xs:documentation>
            </xs:annotation>
          </xs:element>
          <xs:element ref="Corresponding_spots"/>
        </xs:sequence>
        <xs:sequence>
          <xs:element name="Spot_of_interest" type="xs:boolean" fixed="true">
            <xs:annotation>
              <xs:documentation>Spots with qualitative or quantitative difference in the given gel pair (set to value true)</xs:documentation>
            </xs:annotation>
          </xs:element>
          <xs:element ref="Corresponding_spots" minOccurs="0"/>
        </xs:sequence>
      </xs:choice>
    </xs:sequence>
  </xs:complexType>
</xs:element>

element Annotation_type/Pairing_gel_id

isRef	0
content	simple

annotation

documentation

Related gel identification number

source

<xs:element name="Pairing_gel_id" type="xs:long">
  <xs:annotation>
    <xs:documentation>Related gel identification number</xs:documentation>
  </xs:annotation>
</xs:element>

element Annotation_type/Representative_spot

isRef	0
content	simple
fixed	true

annotation

documentation

Spot that is in both gels well and equally expressed (set to value true)

source

<xs:element name="Representative_spot" type="xs:boolean" fixed="true">
  <xs:annotation>
    <xs:documentation>Spot that is in both gels well and equally expressed (set to value true)</xs:documentation>
  </xs:annotation>
</xs:element>

element Annotation_type/Spot_of_interest

isRef	0
content	simple
fixed	true

annotation

documentation

Spots with qualitative or quantitative difference in the given gel pair (set to value true)

source

<xs:element name="Spot_of_interest" type="xs:boolean" fixed="true">
  <xs:annotation>
    <xs:documentation>Spots with qualitative or quantitative difference in the given gel pair (set to value true)</xs:documentation>
  </xs:annotation>
</xs:element>

element Annotation_types

Summary tag for all annotation types related to this spot in the gel

source

<xs:element name="Annotation_types">
  <xs:annotation>
    <xs:documentation>Summary tag for all annotation types related to this spot in the gel</xs:documentation>
  </xs:annotation>
  <xs:complexType>
    <xs:sequence>
      <xs:element ref="Annotation_type" maxOccurs="unbounded"/>
    </xs:sequence>
  </xs:complexType>
</xs:element>

element Boundary_point

Pixel_x_coordinate Pixel_y_coordinate

Boundary pixel of the spot in the gel

source

<xs:element name="Boundary_point">
  <xs:annotation>
    <xs:documentation>Boundary pixel of the spot in the gel</xs:documentation>
  </xs:annotation>
  <xs:complexType>
    <xs:sequence>
      <xs:element name="Pixel_x_coordinate" type="xs:double">
        <xs:annotation>
          <xs:documentation>Coordinate x of the boundary pixel</xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element name="Pixel_y_coordinate" type="xs:double">
        <xs:annotation>
          <xs:documentation>Coordinate y of the boundary pixel</xs:documentation>
        </xs:annotation>
      </xs:element>
    </xs:sequence>
  </xs:complexType>
</xs:element>

element Boundary_point/Pixel_x_coordinate

isRef	0
content	simple

annotation

documentation

Coordinate x of the boundary pixel

source

<xs:element name="Pixel_x_coordinate" type="xs:double">
  <xs:annotation>
    <xs:documentation>Coordinate x of the boundary pixel</xs:documentation>
  </xs:annotation>
</xs:element>

element Boundary_point/Pixel_y_coordinate

isRef	0
content	simple

annotation

documentation

Coordinate y of the boundary pixel

source

<xs:element name="Pixel_y_coordinate" type="xs:double">
  <xs:annotation>
    <xs:documentation>Coordinate y of the boundary pixel</xs:documentation>
  </xs:annotation>
</xs:element>

element Boundary_points

Summary tag for all boundary pixels of this spot in the gel

source

<xs:element name="Boundary_points">
  <xs:annotation>
    <xs:documentation>Summary tag for all boundary pixels of this spot in the gel</xs:documentation>
  </xs:annotation>
  <xs:complexType>
    <xs:sequence>
      <xs:annotation>
        <xs:documentation>Pixels must be ordered</xs:documentation>
      </xs:annotation>
      <xs:element ref="Boundary_point" maxOccurs="unbounded"/>
    </xs:sequence>
  </xs:complexType>
</xs:element>

Spot modeled with the circle

source

<xs:element name="Circle">
  <xs:annotation>
    <xs:documentation>Spot modeled with the circle</xs:documentation>
  </xs:annotation>
  <xs:complexType>
    <xs:sequence>
      <xs:element name="Radius" type="xs:double">
        <xs:annotation>
          <xs:documentation>Radius of the spot in pixels</xs:documentation>
        </xs:annotation>
      </xs:element>
    </xs:sequence>
  </xs:complexType>
</xs:element>

element Circle/Radius

isRef	0
content	simple

annotation

documentation

Radius of the spot in pixels

source

<xs:element name="Radius" type="xs:double">
  <xs:annotation>
    <xs:documentation>Radius of the spot in pixels</xs:documentation>
  </xs:annotation>
</xs:element>

element Corresponding_spot

Spot_id_in_gel Probability

Corresponding spot in the related gel related to this spot in the gel

source

<xs:element name="Corresponding_spot">
  <xs:annotation>
    <xs:documentation>Corresponding spot in the related gel related to this spot in the gel</xs:documentation>
  </xs:annotation>
  <xs:complexType>
    <xs:sequence>
      <xs:element name="Spot_id_in_gel" type="xs:long">
        <xs:annotation>
          <xs:documentation>Identifying number assigned to the corresponding spot in the related gel</xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element name="Probability" type="xs:double" minOccurs="0">
        <xs:annotation>
          <xs:documentation>Probability that this corresponding spot is a true corresponding spot</xs:documentation>
        </xs:annotation>
      </xs:element>
    </xs:sequence>
  </xs:complexType>
</xs:element>

element Corresponding_spot/Spot_id_in_gel

isRef	0
content	simple

annotation

documentation

Identifying number assigned to the corresponding spot in the related gel

source

<xs:element name="Spot_id_in_gel" type="xs:long">
  <xs:annotation>
    <xs:documentation>Identifying number assigned to the corresponding spot in the related gel</xs:documentation>
  </xs:annotation>
</xs:element>

element Corresponding_spot/Probability

isRef	0
content	simple

annotation

documentation

Probability that this corresponding spot is a true corresponding spot

source

<xs:element name="Probability" type="xs:double" minOccurs="0">
  <xs:annotation>
    <xs:documentation>Probability that this corresponding spot is a true corresponding spot</xs:documentation>
  </xs:annotation>
</xs:element>

element Corresponding_spots

Annotation_type Annotation_type

annotation

documentation

Summary tag for all corresponding spots in the related gel related to this spot in the gel

source

<xs:element name="Corresponding_spots">
  <xs:annotation>
    <xs:documentation>Summary tag for all corresponding spots in the related gel related to this spot in the gel</xs:documentation>
  </xs:annotation>
  <xs:complexType>
    <xs:sequence>
      <xs:element ref="Corresponding_spot" maxOccurs="unbounded"/>
    </xs:sequence>
  </xs:complexType>
</xs:element>

Algorithm_id Algorithm_name Authors_of_algorithm Authors_of_implementation Contact_information URI_to_description Test_date Machine_type Spots_detection_time Representative_spots_detection_time Spots_of_interest_detection_time Summary_of_results Comment Spots

Description of a single computer vision algorithm applied to this gel

source

<xs:element name="Cv_algorithm">
  <xs:annotation>
    <xs:documentation>Description of a single computer vision algorithm applied to this gel</xs:documentation>
  </xs:annotation>
  <xs:complexType>
    <xs:sequence>
      <xs:element name="Algorithm_id" type="xs:long">
        <xs:annotation>
          <xs:documentation>Identifying number assigned to the algorithm in the gel</xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element name="Algorithm_name" type="xs:string" minOccurs="0">
        <xs:annotation>
          <xs:documentation>Logical name of the algorithm</xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element name="Authors_of_algorithm" type="xs:string">
        <xs:annotation>
          <xs:documentation>Authors of this algorithm</xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element name="Authors_of_implementation" type="xs:string">
        <xs:annotation>
          <xs:documentation>Authors of algorithm implementation</xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element name="Contact_information" type="xs:string">
        <xs:annotation>
          <xs:documentation>Authors contact information</xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element name="URI_to_description" type="xs:anyURI">
        <xs:annotation>
          <xs:documentation>Location (Universal Resource Identifier) where the description of the algorithm can be found</xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element name="Test_date" type="xs:date" minOccurs="0">
        <xs:annotation>
          <xs:documentation>Date on which the test was performed</xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element name="Machine_type" type="xs:string" minOccurs="0">
        <xs:annotation>
          <xs:documentation>Description of the computer used for testing</xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element name="Spots_detection_time" type="xs:long" minOccurs="0">
        <xs:annotation>
          <xs:documentation>Time needed to detect all the spots in milli seconds</xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element name="Representative_spots_detection_time" type="xs:long" minOccurs="0">
        <xs:annotation>
          <xs:documentation>Time needed to detect all representative spots in milli seconds</xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element name="Spots_of_interest_detection_time" type="xs:long" minOccurs="0">
        <xs:annotation>
          <xs:documentation>Time needed to detect all spots of interest in milli seconds</xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element name="Summary_of_results" type="xs:string" minOccurs="0">
        <xs:annotation>
          <xs:documentation>Summary of algorithm´s efficiency</xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element name="Comment" type="xs:string" minOccurs="0">
        <xs:annotation>
          <xs:documentation>Additional details about the algorithm</xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element ref="Spots" minOccurs="0"/>
    </xs:sequence>
  </xs:complexType>
</xs:element>

element Cv_algorithm/Algorithm_id

isRef	0
content	simple

annotation

documentation

Identifying number assigned to the algorithm in the gel

source

<xs:element name="Algorithm_id" type="xs:long">
  <xs:annotation>
    <xs:documentation>Identifying number assigned to the algorithm in the gel</xs:documentation>
  </xs:annotation>
</xs:element>

element Cv_algorithm/Algorithm_name

isRef	0
content	simple

annotation

documentation

Logical name of the algorithm

source

<xs:element name="Algorithm_name" type="xs:string" minOccurs="0">
  <xs:annotation>
    <xs:documentation>Logical name of the algorithm</xs:documentation>
  </xs:annotation>
</xs:element>

element Cv_algorithm/Authors_of_algorithm

isRef	0
content	simple

annotation

documentation

Authors of this algorithm

source

<xs:element name="Authors_of_algorithm" type="xs:string">
  <xs:annotation>
    <xs:documentation>Authors of this algorithm</xs:documentation>
  </xs:annotation>
</xs:element>

element Cv_algorithm/Authors_of_implementation

isRef	0
content	simple

annotation

documentation

Authors of algorithm implementation

source

<xs:element name="Authors_of_implementation" type="xs:string">
  <xs:annotation>
    <xs:documentation>Authors of algorithm implementation</xs:documentation>
  </xs:annotation>
</xs:element>

element Cv_algorithm/Contact_information

isRef	0
content	simple

annotation

documentation

Authors contact information

source

<xs:element name="Contact_information" type="xs:string">
  <xs:annotation>
    <xs:documentation>Authors contact information</xs:documentation>
  </xs:annotation>
</xs:element>

element Cv_algorithm/URI_to_description

isRef	0
content	simple

annotation

documentation

Location (Universal Resource Identifier) where the description of the algorithm can be found

source

<xs:element name="URI_to_description" type="xs:anyURI">
  <xs:annotation>
    <xs:documentation>Location (Universal Resource Identifier) where the description of the algorithm can be found</xs:documentation>
  </xs:annotation>
</xs:element>

element Cv_algorithm/Test_date

isRef	0
content	simple

annotation

documentation

Date on which the test was performed

source

<xs:element name="Test_date" type="xs:date" minOccurs="0">
  <xs:annotation>
    <xs:documentation>Date on which the test was performed</xs:documentation>
  </xs:annotation>
</xs:element>

element Cv_algorithm/Machine_type

isRef	0
content	simple

annotation

documentation

Description of the computer used for testing

source

<xs:element name="Machine_type" type="xs:string" minOccurs="0">
  <xs:annotation>
    <xs:documentation>Description of the computer used for testing</xs:documentation>
  </xs:annotation>
</xs:element>

element Cv_algorithm/Spots_detection_time

isRef	0
content	simple

annotation

documentation

Time needed to detect all the spots in milli seconds

source

<xs:element name="Spots_detection_time" type="xs:long" minOccurs="0">
  <xs:annotation>
    <xs:documentation>Time needed to detect all the spots in milli seconds</xs:documentation>
  </xs:annotation>
</xs:element>

element Cv_algorithm/Representative_spots_detection_time

isRef	0
content	simple

annotation

documentation

Time needed to detect all representative spots in milli seconds

source

<xs:element name="Representative_spots_detection_time" type="xs:long" minOccurs="0">
  <xs:annotation>
    <xs:documentation>Time needed to detect all representative spots in milli seconds</xs:documentation>
  </xs:annotation>
</xs:element>

element Cv_algorithm/Spots_of_interest_detection_time

isRef	0
content	simple

annotation

documentation

Time needed to detect all spots of interest in milli seconds

source

<xs:element name="Spots_of_interest_detection_time" type="xs:long" minOccurs="0">
  <xs:annotation>
    <xs:documentation>Time needed to detect all spots of interest in milli seconds</xs:documentation>
  </xs:annotation>
</xs:element>

element Cv_algorithm/Summary_of_results

isRef	0
content	simple

annotation

documentation

Summary of algorithm´s efficiency

source

<xs:element name="Summary_of_results" type="xs:string" minOccurs="0">
  <xs:annotation>
    <xs:documentation>Summary of algorithm´s efficiency</xs:documentation>
  </xs:annotation>
</xs:element>

element Cv_algorithm/Comment

isRef	0
content	simple

annotation

documentation

Additional details about the algorithm

source

<xs:element name="Comment" type="xs:string" minOccurs="0">
  <xs:annotation>
    <xs:documentation>Additional details about the algorithm</xs:documentation>
  </xs:annotation>
</xs:element>

element Cv_algorithms

Summary tag for all computer vision algorithms applied to this gel

source

<xs:element name="Cv_algorithms">
  <xs:annotation>
    <xs:documentation>Summary tag for all computer vision algorithms applied to this gel</xs:documentation>
  </xs:annotation>
  <xs:complexType>
    <xs:sequence>
      <xs:element ref="Cv_algorithm" maxOccurs="unbounded"/>
    </xs:sequence>
  </xs:complexType>
</xs:element>

Experiment_description Gels_2D

Version of the XML Schema

annotation

documentation

Initial tag on which a data file is built

source

<xs:element name="CVRML">
  <xs:annotation>
    <xs:documentation>Initial tag on which a data file is built</xs:documentation>
  </xs:annotation>
  <xs:complexType>
    <xs:sequence>
      <xs:element name="Experiment_description" type="xs:string" minOccurs="0">
        <xs:annotation>
          <xs:documentation>Reveals basic logical relations between the gels in the experiment, the hypothesis behind it etc.</xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element ref="Gels_2D"/>
    </xs:sequence>
    <xs:attribute name="Version" type="xs:string" use="required">
      <xs:annotation>
        <xs:documentation>Version of the XML Schema</xs:documentation>
      </xs:annotation>
    </xs:attribute>
  </xs:complexType>
</xs:element>

element CVRML/Experiment_description

isRef	0
content	simple

annotation

documentation

Reveals basic logical relations between the gels in the experiment, the hypothesis behind it etc.

source

<xs:element name="Experiment_description" type="xs:string" minOccurs="0">
  <xs:annotation>
    <xs:documentation>Reveals basic logical relations between the gels in the experiment, the hypothesis behind it etc.</xs:documentation>
  </xs:annotation>
</xs:element>

Size_of_big_axis Size_of_small_axis Rotation_angle

Spot modeled with the ellipse

source

<xs:element name="Ellipse">
  <xs:annotation>
    <xs:documentation>Spot modeled with the ellipse</xs:documentation>
  </xs:annotation>
  <xs:complexType>
    <xs:sequence>
      <xs:element name="Size_of_big_axis" type="xs:double">
        <xs:annotation>
          <xs:documentation>Size of the ellipse's big axis in pixels </xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element name="Size_of_small_axis" type="xs:double">
        <xs:annotation>
          <xs:documentation>Size of the ellipse's small axis in pixels </xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element name="Rotation_angle" type="xs:double">
        <xs:annotation>
          <xs:documentation>Angle for which the ellipse is rotated</xs:documentation>
        </xs:annotation>
      </xs:element>
    </xs:sequence>
  </xs:complexType>
</xs:element>

element Ellipse/Size_of_big_axis

isRef	0
content	simple

annotation

documentation

Size of the ellipse's big axis in pixels

source

<xs:element name="Size_of_big_axis" type="xs:double">
  <xs:annotation>
    <xs:documentation>Size of the ellipse's big axis in pixels </xs:documentation>
  </xs:annotation>
</xs:element>

element Ellipse/Size_of_small_axis

isRef	0
content	simple

annotation

documentation

Size of the ellipse's small axis in pixels

source

<xs:element name="Size_of_small_axis" type="xs:double">
  <xs:annotation>
    <xs:documentation>Size of the ellipse's small axis in pixels </xs:documentation>
  </xs:annotation>
</xs:element>

element Ellipse/Rotation_angle

isRef	0
content	simple

annotation

documentation

Angle for which the ellipse is rotated

source

<xs:element name="Rotation_angle" type="xs:double">
  <xs:annotation>
    <xs:documentation>Angle for which the ellipse is rotated</xs:documentation>
  </xs:annotation>
</xs:element>

element Gaussian_model

Standard_deviation_in_x Standard_deviation_in_y

Spot modeled with the Gaussian function

source

<xs:element name="Gaussian_model">
  <xs:annotation>
    <xs:documentation>Spot modeled with the Gaussian function</xs:documentation>
  </xs:annotation>
  <xs:complexType>
    <xs:sequence>
      <xs:element name="Standard_deviation_in_x" type="xs:double">
        <xs:annotation>
          <xs:documentation>Standard deviation of the Gaussian model in x direction</xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element name="Standard_deviation_in_y" type="xs:double">
        <xs:annotation>
          <xs:documentation>Standard deviation of the Gaussian model in y direction</xs:documentation>
        </xs:annotation>
      </xs:element>
    </xs:sequence>
  </xs:complexType>
</xs:element>

element Gaussian_model/Standard_deviation_in_x

isRef	0
content	simple

annotation

documentation

Standard deviation of the Gaussian model in x direction

source

<xs:element name="Standard_deviation_in_x" type="xs:double">
  <xs:annotation>
    <xs:documentation>Standard deviation of the Gaussian model in x direction</xs:documentation>
  </xs:annotation>
</xs:element>

element Gaussian_model/Standard_deviation_in_y

isRef	0
content	simple

annotation

documentation

Standard deviation of the Gaussian model in y direction

source

<xs:element name="Standard_deviation_in_y" type="xs:double">
  <xs:annotation>
    <xs:documentation>Standard deviation of the Gaussian model in y direction</xs:documentation>
  </xs:annotation>
</xs:element>

Gel_id Image_URI Ground_truth_author Ground_truth_date Sample_origin Type Stain Comment Spots Cv_algorithms

Description of a 2-DE gel

source

<xs:element name="Gel_2D">
  <xs:annotation>
    <xs:documentation>Description of a 2-DE gel</xs:documentation>
  </xs:annotation>
  <xs:complexType>
    <xs:sequence>
      <xs:element name="Gel_id" type="xs:long">
        <xs:annotation>
          <xs:documentation>Gel identification number</xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element name="Image_URI" type="xs:anyURI">
        <xs:annotation>
          <xs:documentation>Location (Universal Resource Identifier) where the gel image is stored</xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element name="Ground_truth_author" type="xs:string" minOccurs="0">
        <xs:annotation>
          <xs:documentation>Name of the experimenter who produced the ground truth information</xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element name="Ground_truth_date" type="xs:date" minOccurs="0">
        <xs:annotation>
          <xs:documentation>Date when the ground truth information was produced</xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element name="Sample_origin" type="xs:string" minOccurs="0">
        <xs:annotation>
          <xs:documentation>Reveals the tissue used (from species name downwards)</xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element name="Type" minOccurs="0">
        <xs:annotation>
          <xs:documentation>Describes the experimental condition</xs:documentation>
        </xs:annotation>
        <xs:simpleType>
          <xs:restriction base="xs:string">
            <xs:enumeration value="Proteome"/>
            <xs:enumeration value="Control"/>
            <xs:enumeration value="Target"/>
            <xs:enumeration value="Wild type"/>
            <xs:enumeration value="Knock out"/>
          </xs:restriction>
        </xs:simpleType>
      </xs:element>
      <xs:element name="Stain" type="xs:string" minOccurs="0">
        <xs:annotation>
          <xs:documentation>Stain(s) used for identification of protein spots</xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element name="Comment" type="xs:string" minOccurs="0">
        <xs:annotation>
          <xs:documentation>Additional details about the gel</xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element ref="Spots" minOccurs="0"/>
      <xs:element ref="Cv_algorithms" minOccurs="0"/>
    </xs:sequence>
  </xs:complexType>
</xs:element>

element Gel_2D/Gel_id

isRef	0
content	simple

annotation

documentation

Gel identification number

source

<xs:element name="Gel_id" type="xs:long">
  <xs:annotation>
    <xs:documentation>Gel identification number</xs:documentation>
  </xs:annotation>
</xs:element>

element Gel_2D/Image_URI

isRef	0
content	simple

annotation

documentation

Location (Universal Resource Identifier) where the gel image is stored

source

<xs:element name="Image_URI" type="xs:anyURI">
  <xs:annotation>
    <xs:documentation>Location (Universal Resource Identifier) where the gel image is stored</xs:documentation>
  </xs:annotation>
</xs:element>

element Gel_2D/Ground_truth_author

isRef	0
content	simple

annotation

documentation

Name of the experimenter who produced the ground truth information

source

<xs:element name="Ground_truth_author" type="xs:string" minOccurs="0">
  <xs:annotation>
    <xs:documentation>Name of the experimenter who produced the ground truth information</xs:documentation>
  </xs:annotation>
</xs:element>

element Gel_2D/Ground_truth_date

isRef	0
content	simple

annotation

documentation

Date when the ground truth information was produced

source

<xs:element name="Ground_truth_date" type="xs:date" minOccurs="0">
  <xs:annotation>
    <xs:documentation>Date when the ground truth information was produced</xs:documentation>
  </xs:annotation>
</xs:element>

element Gel_2D/Sample_origin

isRef	0
content	simple

annotation

documentation

Reveals the tissue used (from species name downwards)

source

<xs:element name="Sample_origin" type="xs:string" minOccurs="0">
  <xs:annotation>
    <xs:documentation>Reveals the tissue used (from species name downwards)</xs:documentation>
  </xs:annotation>
</xs:element>

restriction of xs:string

properties

isRef	0
content	simple

facets

enumeration	Proteome
enumeration	Control
enumeration	Target
enumeration	Wild type
enumeration	Knock out

annotation

documentation

Describes the experimental condition

source

<xs:element name="Type" minOccurs="0">
  <xs:annotation>
    <xs:documentation>Describes the experimental condition</xs:documentation>
  </xs:annotation>
  <xs:simpleType>
    <xs:restriction base="xs:string">
      <xs:enumeration value="Proteome"/>
      <xs:enumeration value="Control"/>
      <xs:enumeration value="Target"/>
      <xs:enumeration value="Wild type"/>
      <xs:enumeration value="Knock out"/>
    </xs:restriction>
  </xs:simpleType>
</xs:element>

isRef	0
content	simple

annotation

documentation

Stain(s) used for identification of protein spots

source

<xs:element name="Stain" type="xs:string" minOccurs="0">
  <xs:annotation>
    <xs:documentation>Stain(s) used for identification of protein spots</xs:documentation>
  </xs:annotation>
</xs:element>

element Gel_2D/Comment

isRef	0
content	simple

annotation

documentation

Additional details about the gel

source

<xs:element name="Comment" type="xs:string" minOccurs="0">
  <xs:annotation>
    <xs:documentation>Additional details about the gel</xs:documentation>
  </xs:annotation>
</xs:element>

Summary tag for all 2-DE gels in the experiment

source

<xs:element name="Gels_2D">
  <xs:annotation>
    <xs:documentation>Summary tag for all 2-DE gels in the experiment</xs:documentation>
  </xs:annotation>
  <xs:complexType>
    <xs:sequence>
      <xs:element ref="Gel_2D" maxOccurs="unbounded"/>
    </xs:sequence>
  </xs:complexType>
</xs:element>

Spot_surface Circle Rectangle Ellipse Boundary_points

Summary tag for all 2D models of this spot in the gel

source

<xs:element name="Models_2D">
  <xs:annotation>
    <xs:documentation>Summary tag for all 2D models of this spot in the gel</xs:documentation>
  </xs:annotation>
  <xs:complexType>
    <xs:sequence>
      <xs:element name="Spot_surface" type="xs:double" minOccurs="0">
        <xs:annotation>
          <xs:documentation>Surface of the spot in pixels</xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element ref="Circle" minOccurs="0"/>
      <xs:element ref="Rectangle" minOccurs="0"/>
      <xs:element ref="Ellipse" minOccurs="0"/>
      <xs:element ref="Boundary_points" minOccurs="0"/>
    </xs:sequence>
  </xs:complexType>
</xs:element>

element Models_2D/Spot_surface

isRef	0
content	simple

annotation

documentation

Surface of the spot in pixels

source

<xs:element name="Spot_surface" type="xs:double" minOccurs="0">
  <xs:annotation>
    <xs:documentation>Surface of the spot in pixels</xs:documentation>
  </xs:annotation>
</xs:element>

Spot_volume Gaussian_model

Summary tag for all 3D models of this spot in the gel

source

<xs:element name="Models_3D">
  <xs:annotation>
    <xs:documentation>Summary tag for all 3D models of this spot in the gel</xs:documentation>
  </xs:annotation>
  <xs:complexType>
    <xs:sequence>
      <xs:element name="Spot_volume" type="xs:double" minOccurs="0">
        <xs:annotation>
          <xs:documentation>Volume of the spot in voxels</xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element ref="Gaussian_model" minOccurs="0"/>
    </xs:sequence>
  </xs:complexType>
</xs:element>

element Models_3D/Spot_volume

isRef	0
content	simple

annotation

documentation

Volume of the spot in voxels

source

<xs:element name="Spot_volume" type="xs:double" minOccurs="0">
  <xs:annotation>
    <xs:documentation>Volume of the spot in voxels</xs:documentation>
  </xs:annotation>
</xs:element>

Spot modeled with the rectangle

source

<xs:element name="Rectangle">
  <xs:annotation>
    <xs:documentation>Spot modeled with the rectangle</xs:documentation>
  </xs:annotation>
  <xs:complexType>
    <xs:sequence>
      <xs:element name="Size_in_x" type="xs:double">
        <xs:annotation>
          <xs:documentation>Size of the spot in x direction in pixels </xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element name="Size_in_y" type="xs:double">
        <xs:annotation>
          <xs:documentation>Size of the spot in y direction in pixels </xs:documentation>
        </xs:annotation>
      </xs:element>
    </xs:sequence>
  </xs:complexType>
</xs:element>

element Rectangle/Size_in_x

isRef	0
content	simple

annotation

documentation

Size of the spot in x direction in pixels

source

<xs:element name="Size_in_x" type="xs:double">
  <xs:annotation>
    <xs:documentation>Size of the spot in x direction in pixels </xs:documentation>
  </xs:annotation>
</xs:element>

element Rectangle/Size_in_y

isRef	0
content	simple

annotation

documentation

Size of the spot in y direction in pixels

source

<xs:element name="Size_in_y" type="xs:double">
  <xs:annotation>
    <xs:documentation>Size of the spot in y direction in pixels </xs:documentation>
  </xs:annotation>
</xs:element>

Spot_id_in_gel Pixel_x_coordinate Pixel_y_coordinate Intensity Probability Comment Annotation_types Models_2D Models_3D

Description of a single protein spot from the gel

source

<xs:element name="Spot">
  <xs:annotation>
    <xs:documentation>Description of a single protein spot from the gel</xs:documentation>
  </xs:annotation>
  <xs:complexType>
    <xs:sequence>
      <xs:element name="Spot_id_in_gel" type="xs:long">
        <xs:annotation>
          <xs:documentation>Identifying number assigned to the spot in the gel</xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element name="Pixel_x_coordinate" type="xs:double">
        <xs:annotation>
          <xs:documentation>Coordinate x of the spot centre in pixels</xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element name="Pixel_y_coordinate" type="xs:double">
        <xs:annotation>
          <xs:documentation>Coordinate y of the spot centre in pixels</xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element name="Intensity" type="xs:double">
        <xs:annotation>
          <xs:documentation>Intensity of the spot at the given coordinate</xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element name="Probability" type="xs:double" minOccurs="0">
        <xs:annotation>
          <xs:documentation>Probability that this spot is a true spot</xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element name="Comment" type="xs:string" minOccurs="0">
        <xs:annotation>
          <xs:documentation>Additional details about the spot</xs:documentation>
        </xs:annotation>
      </xs:element>
      <xs:element ref="Annotation_types" minOccurs="0"/>
      <xs:element ref="Models_2D" minOccurs="0"/>
      <xs:element ref="Models_3D" minOccurs="0"/>
    </xs:sequence>
  </xs:complexType>
</xs:element>

element Spot/Spot_id_in_gel

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content	simple

annotation

documentation

Identifying number assigned to the spot in the gel

source

<xs:element name="Spot_id_in_gel" type="xs:long">
  <xs:annotation>
    <xs:documentation>Identifying number assigned to the spot in the gel</xs:documentation>
  </xs:annotation>
</xs:element>

element Spot/Pixel_x_coordinate

isRef	0
content	simple

annotation

documentation

Coordinate x of the spot centre in pixels

source

<xs:element name="Pixel_x_coordinate" type="xs:double">
  <xs:annotation>
    <xs:documentation>Coordinate x of the spot centre in pixels</xs:documentation>
  </xs:annotation>
</xs:element>

element Spot/Pixel_y_coordinate

isRef	0
content	simple

annotation

documentation

Coordinate y of the spot centre in pixels

source

<xs:element name="Pixel_y_coordinate" type="xs:double">
  <xs:annotation>
    <xs:documentation>Coordinate y of the spot centre in pixels</xs:documentation>
  </xs:annotation>
</xs:element>

element Spot/Intensity

isRef	0
content	simple

annotation

documentation

Intensity of the spot at the given coordinate

source

<xs:element name="Intensity" type="xs:double">
  <xs:annotation>
    <xs:documentation>Intensity of the spot at the given coordinate</xs:documentation>
  </xs:annotation>
</xs:element>

element Spot/Probability

isRef	0
content	simple

annotation

documentation

Probability that this spot is a true spot

source

<xs:element name="Probability" type="xs:double" minOccurs="0">
  <xs:annotation>
    <xs:documentation>Probability that this spot is a true spot</xs:documentation>
  </xs:annotation>
</xs:element>

isRef	0
content	simple

annotation

documentation

Additional details about the spot

source

<xs:element name="Comment" type="xs:string" minOccurs="0">
  <xs:annotation>
    <xs:documentation>Additional details about the spot</xs:documentation>
  </xs:annotation>
</xs:element>

Summary tag for all protein spots in the gel

source

<xs:element name="Spots">
  <xs:annotation>
    <xs:documentation>Summary tag for all protein spots in the gel</xs:documentation>
  </xs:annotation>
  <xs:complexType>
    <xs:sequence>
      <xs:element ref="Spot" maxOccurs="unbounded"/>
    </xs:sequence>
  </xs:complexType>
</xs:element>

XML Schema documentation generated with XMLSpy Schema Editor http://www.altova.com/xmlspy